Anorectal Malformations (Imperforate Anus)

Last updated: April 6, 2026Bookmark

An imperforate anus is a congenital condition where the normal anal opening is absent. It is often associated with abnormal pelvic muscles, sphincters, and innervation. It may include fistulas opening into the vaginal vault or perineum, colourethral fistulas, or a blind rectum. Rectourethal fistula is more common in boys, while a rectovestibular fistula is more common in girls.

Anorectal malformations are slightly more common in boys.

Spectrum of anorectal malformations

TermDescription
SimpleMembranous covering or fistulas opening into the perineum
ComplexCloaca or fistulas opening into the genitourinary tract.

Wingspread classification (Anatomical level)

TypeAnatomyKey FeaturesPrognosis
LowRectum below the levator aniPerineal fistulaGood continence
IntermediateAt the level of the levator aniA fistula is often presentVariable
HighAbove the levator aniComplex fistulasPoorer continence

Peña Classification (Fistula-Based)

DemographicFistulas
MalesPerineal fistula (low), rectobulbar urethral fistula, rectoprostatic urethral fistula, rectovesical fistula (high), no fistula (rare, severe)
FemalesPerineal fistula, rectovestibular fistula (most common), rectovaginal fistula, cloaca (most complex)
  • Risk factors
    • Genetic associations
      • Currarino syndrome
      • Townes-Brocks syndrome
      • Pallister-Hall syndrome
      • Trisomy 13
      • Trisomy 18
      • Trisomy 21
    • Family history of imperforate anus
    • Environmental risk factors
      • Maternal diabetes
      • Obesity
      • Paternal smoking
  • Associated anomalies
    • VACTERL association
    • MURCS
    • OEIS complex
  • Pathophysiology
    • The hindgut ends in a common cavity known as the cloaca. The cloaca is divided by the urorectal septum into anterior (urogenital sinus) and posterior (anorectal canals)
    • At weeks 7 – 8, the cloacal membrane breaks down to form the urogenital opening and anal opening.
    • Mesenchymal migration forms the levator ani muscles, which establish the external anal sphincter complex
    • Developmental errors in anorectal malformations include:
      • Failure of cloacal septation → fistulas or cloaca (severe form)
      • Abnormal cloacal membrane breakdown → imperforate anus
      • Arrested caudal migration of the rectum → high lesion (above the levator ani) or low lesion (below the levator ani)
      • Abnormal mesodermal development → incontinence and sacral anomalies
      • Abnormal innervation → tethered cord and spinal dysraphism → poor voluntary bowel control and neurogenic bowel dysfunction
  • Signs and symptoms
    • Absent anal opening
    • Failure to pass meconium
    • Abdominal distension
    • Meconium in the perineum (perineal fistula), urethra (rectourethral fistula), or vagina (rectovaginal/vestibular fistula)
    • Anal pit or misplaced opening
    • Flat perineum or absent gluteal folds
    • In girls:
      • 1 opening → cloaca
      • 3 openings → vestibular fistula
    • Urinary tract infection
      • Especially in boys due to a colourethral fistula
  • Differentials
    • Anal stenosis
    • Anteriorly placed anus – this is a normal variant
    • Cloacal anomalies
    • Other fistulous conditions
  • Investigations
    • Prone cross-table lateral X-ray
    • Perineal ultrasound
    • Distal colostogram to define fistula anatomy
    • Abdominopelvic ultrasound
    • MRI of the pelvis to assess the pelvic musculature and spinal cord (tethered cord)
    • Echocardiography to rule out cardiac defects
    • Spine imaging
  • Treatment
    • Nil per oral
    • Nasogastric tube for decompression
    • Intravenous fluids and parenteral nutrition
    • Evaluate within 24 – 36 hours
    • Surgical repair
      • Primary anoplasty (perineal approach) for low lesions
      • High/complex lesions have a 3-stage approach: diverting colostomy → definitive repair (Posterior sagittal anorectplasty – PSARP) → colostomy closure
      • Immediate surgical repair for the supralevator type
      • May delay surgical repair if there is an external opening
    • Urinary catheter
    • Anal dilatations 2 weeks after surgery to prevent strictures
    • Monitor feeding and wound healing
    • Education about stoma and skin care
  • Complications
    • Sepsis
    • Wound infection
    • Anastomotic leak
    • Anal stenosis
    • Recurrent fistula
    • Rectal prolapse
    • Constipation
    • Incontinence

Reference Intervals
Biochemistry
ACTHP: <80 ng/L
ALTP: 5–35 U/L
AlbuminP: 35–50 g/L
AldosteroneP: 100–500 pmol/L
Alk. phosphataseP: 30–130 U/L
α-AmylaseP: 0–180 IU/dL
α-FetoproteinS: <10 kU/L
Angiotensin IIP: 5–35 pmol/L
ADHP: 0.9–4.6 pmol/L
ASTP: 5–35 U/L
BicarbonateP: 24–30 mmol/L
BilirubinP: 3–17 μmol/L
BNPP: <50 ng/L
CRPP: <10 mg/L
CalcitoninP: <0.1 mcg/L
Calcium (ionized)P: 1.0–1.25 mmol/L
Calcium (total)P: 2.12–2.60 mmol/L
ChlorideP: 95–105 mmol/L
CholesterolP: <5.0 mmol/L
VLDLP: 0.128–0.645 mmol/L
LDLP: <2.0 mmol/L
HDLP: 0.9–1.93 mmol/L
Cortisol AMP: 450–700 nmol/L
Cortisol MidnightP: 80–280 nmol/L
CK ♂P: 25–195 U/L
CK ♀P: 25–170 U/L
CreatinineP: 70–100 μmol/L
FerritinP: 12–200 mcg/L
FolateS: 2.1 mcg/L
FSHP: 2–8 U/L ♂; >25 menopause
GGT ♂P: 11–51 U/L
GGT ♀P: 7–33 U/L
Glucose (fasting)P: 3.5–5.5 mmol/L
Growth hormoneP: <20 mu/L
HbA1C (DCCT)B: 4–6%
HbA1C (IFCC)B: 20–42 mmol/mol
Iron ♂S: 14–31 μmol/L
Iron ♀S: 11–30 μmol/L
Lactate (venous)P: 0.6–2.4 mmol/L
Lactate (arterial)P: 0.6–1.8 mmol/L
LDHP: 70–250 U/L
LHP: 3–16 U/L
MagnesiumP: 0.75–1.05 mmol/L
OsmolalityP: 278–305 mosmol/kg
PTHP: 0.8–8.5 pmol/L
PotassiumP: 3.5–5.3 mmol/L
Prolactin ♂P: <450 U/L
Prolactin ♀P: <600 U/L
PSAP: 0–4 mcg/mL
Protein (total)P: 60–80 g/L
Red cell folateB: 0.36–1.44 μmol/L
Renin (erect)P: 2.8–4.5 pmol/mL/h
Renin (recumbent)P: 1.1–2.7 pmol/mL/h
SodiumP: 135–145 mmol/L
TBGP: 7–17 mg/L
TSHP: 0.5–4.2 mU/L
T4P: 70–140 nmol/L
Free T4P: 9–22 pmol/L
TIBCS: 54–75 μmol/L
TriglyceridesP: 0.50–2.3 mmol/L
T3P: 1.2–3.0 nmol/L
Troponin TP: <0.1 mcg/L
Urate ♂P: 210–480 μmol/L
Urate ♀P: 150–390 μmol/L
UreaP: 2.5–6.7 mmol/L
Vitamin B12S: 0.13–0.68 nmol/L
Vitamin DS: 50 nmol/L
Arterial Blood Gases
pH7.35–7.45
PaCO₂4.7–6.0 kPa
PaO₂>10.6 kPa
Base excess±2 mmol/L
Urine
Cortisol (free)<280 nmol/24h
Hydroxyindole acetic acid16–73 μmol/24h
Hydroxymethylmandelic acid16–48 μmol/24h
Metanephrines0.03–0.69 μmol/mmol cr.
Osmolality350–1000 mosmol/kg
17-Oxogenic steroids ♂28–30 μmol/24h
17-Oxogenic steroids ♀21–66 μmol/24h
17-Oxosteroids ♂17–76 μmol/24h
17-Oxosteroids ♀14–59 μmol/24h
Phosphate (inorganic)15–50 mmol/24h
Potassium14–120 mmol/24h
Protein<150 mg/24h
Protein/creatinine ratio<3 mg/mmol
Sodium100–250 mmol/24h
Haematology
WCC4.0–11.0 ×10⁹/L
RBC ♂4.5–6.5 ×10¹²/L
RBC ♀3.9–5.6 ×10¹²/L
Hb ♂130–180 g/L
Hb ♀115–160 g/L
PCV ♂0.4–0.54 L/L
PCV ♀0.37–0.47 L/L
MCV76–96 fL
MCH27–32 pg
MCHC300–360 g/L
RDW11.6–14.6%
Neutrophils2.0–7.5 ×10⁹/L (40–75%)
Lymphocytes1.0–4.5 ×10⁹/L (20–45%)
Eosinophils0.04–0.44 ×10⁹/L (1–6%)
Basophils0–0.10 ×10⁹/L (0–1%)
Monocytes0.2–0.8 ×10⁹/L (2–10%)
Platelets150–400 ×10⁹/L
Reticulocytes0.8–2.0% / 25–100 ×10⁹/L
Prothrombin time10–14 s
APTT35–45 s
Paediatric
Pulse Rate (bpm)
Neonate140–160
Infant <1yr120–140
1–5 years110–130
5–12 years80–120
>12 years70–100
Respiratory Rate (tachypnoea)
0–2 months≥60/min
2–12 months≥50/min
1–5 years≥40/min
>5 years≥30/min
Blood Pressure (mmHg)
Term65/45
1 year75/50
4 years85/60
8 years95/65
10 years100/70
Weight Formulas
3–12 months(a + 9)/2 kg
1–6 years2a + 8 kg
>6 years(7a − 5)/2 kg
Haemoglobin (g/dL)
Term newborn13–20
1 month11–18
2 months10–15
1–2 years10–13
>2 years11–14
MUAC (6 months–5 years)
Obese>17.5 cm
Normal13.5–17.4 cm
At risk12.5–13.4 cm
Moderate malnutrition11.5–12.4 cm
Severe malnutrition<11.5 cm
Developmental Milestones
Social smile1.5 months
Head control4 months
Sits unsupported7 months
Crawls10 months
Stands unsupported10–12 months
Walks12–13 months
Talks18 months
CSF WBC (/mm³)
Term newborn0–25
>2 weeks0–5
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